A new artificial intelligence framework, OncoMark, has been introduced by scientists of S N Bose National Centre for Basic Sciences, an autonomous institute of the Department of Science and Technology (DST) working with Ashoka University, for cancer treatment and understanding cancer by its molecular personality and not just its size or spread. Led by Dr. Shubhasis Haldar and Dr. Debayan Gupta, the framework can analyze 3.1 million single cells across 14 cancer types, creating synthetic “pseudo-biopsies". OncoMark achieved over 99% accuracy in internal testing and remained above 96% across five independent cohorts and was validated on 20,000 real-world patient samples from eight major datasets. The new framework published in Communications Biology (Nature Publishing Group). Publication Link: https://doi.org/10.1038/s42003-025-08727-z. The information was posted by PIB Delhi on 26 NOV 2023 3:41PM. (Release ID: 2194660) Visitor Counter : 1063
Key Entities Referenced
Department of Science and Technology (DST): Funding and oversight of the S N Bose National Centre for Basic Sciences.
S N Bose National Centre for Basic Sciences: An autonomous institute that developed the AI framework for cancer research.
OncoMark: The artificial intelligence framework developed to analyze cancer cells based on their molecular characteristics.
Ashoka University: University working with S N Bose National Centre for Basic Sciences for AI framework.
Ministry of Science & Technology
AI unlocks cancer’s secrets for personalized
therapy
Posted On: 26 NOV 2025 3:41PM by PIB Delhi
A new study has introduced an artificial intelligence framework that could change how we understand
and treat cancer. The framework gives us a new lens to look at cancer—not by its size or spread
alone, but by its molecular personality.
Cancer is not just a disease of growing tumors—it is powered by a set of hidden biological programs
called the hallmarks of cancer. These hallmarks explain how healthy cells turn malignant: how they
spread, evade the immune system, and resist treatment. For decades, doctors have relied on staging
systems like TNM, which describe the size and spread of tumors. But such systems often miss the
deeper molecular story—why two patients with the “same” cancer stage can have very different
outcomes.
Scientists of S N Bose National Centre for Basic Sciences, an autonomous institute of the Department
of Science and Technology (DST) working with Ashoka University have introduced the first AI
framework that can read the molecular “mind” of cancer and predict its behavior.
Fig: OncoMark’s neural network decodes the complex molecular signals within cancer cells to
predict hallmark activities.The team led by Dr. Shubhasis Haldar and Dr. Debayan Gupta led the framework titled OncoMark to
analyze 3.1 million single cells across 14 cancer types, creating synthetic “pseudo-biopsies” that
represent hallmark-driven tumor states. This huge dataset allowed the AI to learn how hallmarks like
metastasis, immune evasion, and genomic instability work together to fuel tumor growth and therapy
resistance.
OncoMark achieved over 99% accuracy in internal testing and remained above 96% across five
independent cohorts. It was validated on 20,000 real-world patient samples from eight major datasets,
showing broad applicability. For the first time, scientists could actually visualize how hallmark
activity rises with advancing cancer stage.
The new framework published in Communications Biology (Nature Publishing Group) can reveal
which hallmarks are active in a patient’s tumor, pointing doctors toward drugs that directly target
those processes. It can also help identify aggressive cancers that might look less harmful under
standard staging, supporting earlier intervention.
Publication Link: https://doi.org/10.1038/s42003-025-08727-z
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